Tag Archives: citizen science

CTE + STEM = NY Harbor Restoration

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September 17. Melanie Smith, our Senior Project Manager (10 o’clock), Grace Carter & Cindy Isidoro, our Senior Operations Analysts, and the Harbor SEALs team organizing their first data collection day of the 2016-2017 season.

Welcome back to the 2016 – 2017 research season! Here, at the Career and Technical Education (CTE) Marine Biology Research (MBRP) & Harbor SEALs programs, our budding scientists have started the year picking up where they left off last – In full NY Harbor data collection, data analysis, and restoration mode. Our professional young SEALs scholars are finishing up their year long characterization of the Harlem River, a project designed to inform local government agencies of the environmental status of the Harlem River.

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The Benthos and Biodiversity Teams: (L to R) Isabella Torres (Biodiversity Captain), Marcus Charles (Benthos Captain), Grace Carter (Senior Co-Operations Analyst), and Cindy Isidoro (Senior Co-Operations Analyst). In this figure, they’ve pulled up an Eckman grab with a sample of good old NY muck to see if anything can indeed live in it and what these organisms may indicate of the health of the River.

This project is important because in order to propose viable solutions for the River’s environmental restoration we need to create a baseline of its ecological status. The civic, non-profit group CIVITAS, led by Ms. Maura Smotrich, has placed its trust in our scholars to deliver the information necessary to inform the East River Esplanade Ecological Edge project that will help restore the East and Harlem Rivers. This will in turn improve the lives of millions of New Yorkers. To view some of the preliminary raw data click on the following links: Physical Chemistry, Plankton, & Benthos. (This project is completely student led.)

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The Phys-Chem and Plankton Teams: In the background, Nicholas Ring (Junior Project Manager) heads up the testing of the physical and chemical parameters of the River. During this sampling run he observed that the dissolved oxygen was hovering around 5mg/L which is the first dangerous tolerance marker for most marine organisms. Right below this level, organisms stop reproducing. These levels are characteristic of most of the Harbor where sea walls are located  due to their anti-life characteristics, close to the muck that receives all the CSO effluents, and in September when the water temperature is typically at its apex.

This year, the Marine Biology Research Program is offering its students up to 18 college credits upon successful completion of the Program’s curriculum and assessments. In today’s economy, students need to be college AND career ready. The MBRP offers a 12 college credit program in Science Research through SUNY Albany, 3 college credits for passing the NOCTI Natural Resources Systems exam, and, new this year, 3 college credits for Oceanography through SUNY Stony Brook. Apart from these wonderful opportunities, our high school students will also have the chance, for the first time in NY State, to complete and become certified in Geographic Information Systems through Digital Quest’s SPACE certification. Last season, our CTE internship SEA WORKS program paid out over 50,000 dollars in salary for students’ work throughout their different CTE programs of which CIVITAS was a major internship provider for our MBRP scholars.

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Polychaeta worms are often found in the muck where dissolved oxygen levels are low.

Lastly, our Professional Advisory Committee member Mr. Michael Kessler from ConEdison has been supporting the MBRP and other CTE programs by helping to create a pipeline into technical jobs right out of our High School, the New York Harbor School, to give our young scholars options to enter the world of work with high paying, stable jobs of the future. A big thanks to all our Professional Advisory Committee members for stepping up to the plate and leading our school community members and the MBRP into a year brimming with exciting opportunities.

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Mudsnails are also frequent inhabitants of the River’s benthos.

2016 NEW YORK HARBOR SCHOOL MARINE SCIENCE SYMPOSIUM

Our 2016 Marine Biology Research Community
Our 2016 Marine Biology Research Community

Greetings Marine Biology Research Program (MBRP) scholars, Professional Advisory Committee members, New York Harbor School Staff, Family, and Friends! Thank you again for making the 5th Annual Harbor School Symposium a success. It was especially heartfelt since the director of the event could not be there due to personal circumstances. All the Marine Research scholars, volunteers, guests, guardians, and staff members stepped up to make the night’s events run smoothly. The leadership and teamwork are a testament to the dedication and maturity of all those associated to the MBRP. Click here to view the Symposium results and booklet. Go New York Harbor School Science!

2016 NEW YORK HARBOR SCHOOL MARINE SCIENCE SYMPOSIUM

160427_5th_annual_marine_scieence_symposium_cezanne_2You’re cordially invited to attend our 5th Annual Marine Science Symposium at the New York Harbor School on May 18 starting at 12pm. Experience cutting edge science from our very own Marine Biology Research Scholars and our special guest Mr. Charlie Fitzpatrick, ESRI Schools Program Manager. Mr. Fitzpatrick will be sharing his journey through the exciting world of Geospatial technology. Also presenting are this year’s NYC Science and Engineering Fair participants and finalists including Cezanne Bies and Zain Bin Khalid who received the third award among NYC’s top science scholars for their project on oyster restoration. Go New York Harbor School science!

Please RSVP at: mgonzalez@newyorkharborschool.org

MBRP Scholar Highlight: Cindy Isidoro and the Science of Compost Tea

Compost Tea prepared by Intermediate Marine Research scholar Cindy Isidoro, class of '17.
Compost tea prepared by Intermediate Marine Research scholar Cindy Isidoro, class of ’17.

Cindy Isidoro, Intermediate Marine Research scholar, has begun executing an experiment to test for the effects of various natural/organic fertilizers on the health of radish plants. One of her treatments is compost tea, a brewed mixture created with compost from food scraps at the New York Harbor School and live water from the recirculating aquaculture systems in the Marine Science lab where we grow Tilapia. Cindy will compare the performance of the plants with this tea, plain compost, and plain soil, among other treatments. This project is critical in order to understand new agricultural technologies that address food and environmental justice. As organic products are increasingly sought after to avoid agro-business’ questionable food safety practices and environmental degradation caused by over fertilization with industrial chemicals, compost tea may be a solution for a better planet and healthier lives. Stay tuned for her results! We’d like to thank our awesome project partners and Professional Advisory Committee members from Earth Matter, Infinitae Stockton, Marisa DeDominicis, and Andrea Lieske for all their support!

Cindy Isidoro, class of '17.
Cindy Isidoro, class of ’17.
Cindy's experimental set-up.
Cindy’s experimental set-up.

Geographic Information Systems at the New York Harbor School!

This map was completed by Ivan Carrasquillo, class of '16, as part of the GIS curriculum of the Marine Biology Research Program.

This map was completed by Ivan Carrasquillo, class of ’16, as part of the GIS curriculum of the Marine Biology Research Program.

Whenever the question “where” is asked Geographic Information Systems (GIS) are used to get the best answer. One of the major components of the Marine Biology Research Program is our GIS lab. Marine Biology Research scholars begin with introductory lessons on the importance of maps, the use of Global Positioning Systems for geo-referencing places & geocaching, and the differences between coordinate systems. Our scholars then begin implementing Digital Quest’s STEM aGIS curriculum of which the above map is one example. Our students are also required to begin a GIS project from scratch. We’ve had very diverse projects come out of our lab over the years ranging from Stop and Frisk to coastal land use. This year two of our scholars, Julia Montilla and Maria Giraldo are embarking on the Program’s first consulting project to map the American Chestnut trees that have been restored in Green-Wood cemetery and Prospect Park, NYC, by our Professional Advisory Committee (PAC) partner Bart Chezar and his team. We couldn’t have offered these wonderful opportunities if it wasn’t for the generous support of our PAC partner Jim Hall who has provided us with ArcGIS licenses over the years and the folks at ESRI, the makers of ArcGIS. It is important to note that ArcGIS is the industry standard software in GIS. We have been working to acquire the 2nd and 3rd parts of the curriculum  in order to offer our scholars the possibility of obtaining Digital Quest’s GIS SPACE credential. The GIS field is a up-and-coming STEM field and a great 21st Century skill set for our scholars to add to their ePortfolios.

This map was created by Julia Montilla, class of 16, as part of an ESRI tutorial.
This map was created by Julia Montilla, class of 16, as part of an ESRI tutorial.

 

Marine Genetics at the New York Harbor School!

Marine Biology Research scholars Isabella Torres, Jared Vittore, and Seth Rivera extracting DNA from their algae samples.
Marine Biology Research scholars Isabella Torres, Jared Vittore, and Seth Rivera, class of ’18,  extracting DNA from their algae samples.

On February 6, 2016, a team of five Marine Biology Research scholars set out to sequence the genetic barcodes of marine organisms from the Hudson-Raritan Estuary in order to monitor its biodiversity. Part of our larger CIVITAS project (see previous post), these scholars have collected samples of algae and invertebrates from our Harlem River expeditions to create a baseline of what’s living there today. This type of work requires tedious pipetting, labeling on tiny vials, centrifuging, vortexing, and other crucial steps just to be able to extract the DNA from the organisms’ cells. During our next lab, these scholars will amplify the DNA and run it through a gel electrophoresis in order to prepare for genetic sequencing. The last step will be to identify the species using bioinformatics. You can see their research proposals here. A big thanks to our sponsor organization The Urban Barcode Project and Dr. Christine Marizzi from Cold Spring Harbor Lab for her and her team’s support.

Marine Biology Research scholars Zen Mena-Rodriguez and Nailea Rodriguez extracting the gonads of their marine invertebrate samples.
Marine Biology Research scholars Zen Mena-Rodriguez and Nailea Rodriguez, class of ’18, extracting the gonads from their marine invertebrate samples.

SEALS & CIVITAS: Citizen Science Monitoring of the East River Esplanade

Pierre, senior genetic scientist mentor, and Nailea, beginner geneticist of the SEALS biodiversity team documenting a sample during our first East River Esplanade expedition of the NY Harbor SEALS/CIVITAS collaboratioon.
Pierre Landet, senior genetic scientist mentor, and Nailea Rodriguez, beginner geneticist of the SEALS biodiversity team documenting a sample during our first East River Esplanade expedition of the NY Harbor SEALS/CIVITAS collaboration.

Yesterday the NY Harbor SEALS team, a citizen science after school program at the New York Harbor School and the consulting branch of the Marine Biology Research Program, embarked on it’s first of at least fourteen expeditions up the East River to characterize the marine habitat between 96 and 116 streets. The purpose of these expeditions is to determine the biodiversity and water quality at this site in order to propose a restoration strategy to local government agencies. Composed of four teams, the SEALS analyze sediment, plankton-plastics, physical-chemistry, and genetic biodiversity samples using professional instrumentation and techniques. We would like to thank our post-secondary and project partners Dr. Alberto Stolfi of NYU, Dr. Kathleen Nolan of St. Francis College, Dr. Michael Judge of Manhattan College, Maura Smotrich of CIVITAS, the Hudson River Foundation, the Department of Environmental Conservation, the Environmental Defense Fund, the New York Harbor Foundation, and the New York Harbor School for their ongoing commitment to our budding Marine Biology Research scholars. Go New York Harbor School marine science!

NY Harbor SEALS citizen science team.
NY Harbor SEALS citizen science team.

NY Harbor SEALs Quality Assurance Project Plan. 

Download (PDF, 5.37MB)

SEALS/CIVITAS training session
SEALS/CIVITAS training session

Harbor Seals Retake New York Harbor

Harbor seal on a Governors Island dock in February 2015. Credit Ketelyn Fong, Class of 2015, NYHS.
Harbor seal on a Governors Island dock in February, 2015. Credit: Ketelyn Fong, Class of 2015, NYHS.

On one cold afternoon in February during the harsh winter of 2014 a harbor seal climbed on to a dock at Governors Island, NYC. This top consumer of the food chain has now been spotted in several sites along Manhattan Island recently. These are critical events that indirectly or directly, depending on your point of view, reveal that our waters have steadily improved since the passing of the Clean Water Act in 1972. It’s also fitting that the seal revealed itself to us on the last year of our Harbor SEALs / EPA Citizen Science Water Quality Monitoring of the Lower Hudson River Estuary. As we close this important chapter of our work, harbor seal on dock, we’re preparing for our next big project. We’ll now be focusing on creating a baseline study and monitor the effects of different construction materials on the East River. This new project, in partnership with the East Side non-profit community group, CIVITAS, is being run to inform the reconstruction of the East River Esplanade and continue our efforts to restore the harbor seal’s habitat around NYC. Please find an opportunity to read our Final EPA Citizen Science Water Quality Report and visit our webpage. Here’s to the return of the harbor seal!

Harbor SEALs Citizen Science Team's last sampling day of the Water Quality of the Lower Hudson River Estuary.
Harbor SEALs Citizen Science Team’s last sampling day of the Water Quality of the Lower Hudson River Estuary.

2015 New York Harbor School Marine Science Symposium

Andrew Sommer )CLass of 2015) presenting on enhancing biodiversity in the Hudson-Raritan Estuary using porcelain tiles.
Andrew Sommer, class of ’15, presenting on enhancing biodiversity in the Hudson-Raritan Estuary using porcelain tiles. Photo Credit: Nelson Martinez, MBRP Parent

Greetings Marine Biology Research Program (MBRP) scholars, Professional Advisory Committee members, New York Harbor School Staff, Family, and Friends! Thank you again for helping to make the 4th Annual Harbor School Symposium a success. It was a real pleasure to see the team work, quality, and leadership that made the operation run as smoothly as it did on May 13th. Below is a list of highlights that are worth noting:

01) Parents volunteered to feed our hardworking scholars,
02) Parents and scholars worked together to manage the set up of tables and other vital logistics,
03) A team of parents and scholars managed all the judging,
04) School custodial staff set up the mess hall and made sure the building was looking beautiful,
05) School staff brought their classes to view the projects,
06) A student and a parent stepped up to pull the Symposium booklet together,
07) School administration attended the whole event, helped to judge, and opened up our ceremony,
08) The 12th grade judges helped to elevate the level of science and rigor of their younger classmates,
09) A team of volunteer judges from local post-secondary institutions and industry made this the quickest, fairest, and smoothest judging to date,
10) Alumni added to the program spirit and plugged in wherever they were needed,
11) Our Professional Advisory Committee member and guest speaker held the critical award ceremony spot together,
12) Parents photographed the whole event,
13) Over 50 students overcame their fears of presenting and stepped up to the challenge,
…and many, many more little and great things…
I hope you all feel that this was a rewarding experience and that you’ll consider coming out again next year. Click here for the judging results and for more pictures of the event. Click here to view the 2014 – 2015 science projects. Go NYHS Marine Science!
Our Marine Biology Research Community,2015 NYHS ScienceSymposium
Our Marine Biology Research Community (May 13, 2015; NYHS Science Symposium). Photo Credit: Nelson Martinez, MBRP Parent.

New York Harbor School: College AND Career Ready!

Marine Biology Research scholars Nicolle and Tahirah
Marine Biology Research scholars Nicolle and Tahirah

Career and Technical Education (CTE) and Work-Based Learning at the New York Harbor School has just raised the bar! Marine Biology Research (MBRP) scholars Nicolle Martinez and Tahirah Abdo will be graduating with 8 SUNY Albany research college credits, a CTE technical endorsement in Natural Resources Management, first and second awards at the NYC Science and Engineering Fair,  and attend Ivy league and top colleges with full scholarships! This is testimony to both team work, as their projects were supported by the whole MBRP team, and their own personal leadership and ambition. In total, our MBRP senior scholars have received to-date over USD 500, 000 in scholarships, have participated in internships around the city, presented at regional and national conferences, and worked with leading marine scientists to complete their research – all while leading research efforts to find solutions for the restoration of the Hudson-Raritan Estuary. Thank you to all our Professional Advisory Committee members, University & Industry Partners, the NY Harbor School Staff, the NY Harbor Foundation, and family members for all your support!

Finals Round at the American Museum of Natural History
Finals Round at the American Museum of Natural History