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Marine Biology Research 2016-7 Spring Semester in Review

Cindy Isidoro, class of ’17 and Team Benthos mentor (Photo Credit: Van Wong).

The 2016-2017 school year has been one of the most successful for the students of the Marine Biology Research Program. This year our scholars completed phase one of the CIVITAS-NYHS East River Esplanade baseline study. To see our students in action click here. Next, with over half a million students in NYC high schools, five-hundred fifty that apply to compete at the New York City Science and Engineering Fair, to just over one hundred that make it to the finals, the Marine Biology Research Program had two scholars selected for the Second Award in the category of Environmental Science. In total we had a School record breaking high of five students who competed this year.

NYCSEF 2nd Award Winners Grace Carter and Jared Rosin.

Considering that the Urban Assembly New York Harbor School is an un-screened school and that we’re going up against the top screened public science and private schools in the city (i.e. Bronx Science, Brooklyn Tech, Townsend Harris, etc.) this accomplishment is impressive to say the least. Four out of the five that competed were female which are all planning on pursuing a career in STEM; one was an ex-English Language Learner; and one had an Individualized Education Plan. This is testament to what can happen with dedication, team work, and, most importantly,  believing that all students can excel when given the opportunity and the right environment.

2017 NYCSEF Award Winners Grace Carter, Melanie Smith (Erik Wiemer standing in), Jared Rosin, Cindy Isidoro, and Katha Conklin.

One of the most important objectives of the Marine Biology Research Program is to empower students to make a difference in their communities through the research they complete over a three year period. This year they were the stars of the CIVITAS Citizens benefit where philanthropists donated thousands of dollars to the cause of improving the Upper East and East Harlem neighborhoods during their annual benefit at Sothebys on the Upper East Side, NYC.

Project Officers were the stars of the show at the 2017 CIVITAS Citizens benefit at Sothebys.

ConEdison continues to be one of our most active Professional Advisory Committee members. This semester they carried out a Career Management workshop where several of their star employees came to speak to our students about career readiness and opportunites at their company. They spoke about how many companies are willing to train students and even help to pay for their continuing education who meet a minimum of Transferable skills (i.e. team work, timeliness, problem solving), basic tool handling skills (i.e. knowing the difference between a Phillips and flat head screw driver to basic arithmetic and algebra), and who pass a basic entry level assessment.

Industry partners ConEdison visit our scholars for a career development workshop. Among those attending from ConEd were Michael Porto & Michael, Kessler.

Career readiness also requires a workforce that knows and fights for their rights. On April 22nd, our scholars planned a trip to Washington DC to march for Science. In today’s political climate where critical scientific evidence for climate change is being deleted from Federal databases and websites, our scholars weathered the rain with signs in hand and marched in front of the Washington Monument and the White House.

On April 22nd MBRP scholars marched on Washington to protest the current administration’s deleting of scientific evidence on climate change reminiscent of the 1933 Nazi public burning of literature that went against the extreme nationalist ideology of the regime.

Our after school Citizen Science team, the NYHS Harbor SEALs, has been hard at work monitoring the Hudson-Raritan Estuary. Most of the research that comes out of our lab is made possible by the effort and dedication of these young scholars. Typically composed of sophomores through seniors, this year we had a strong representation of freshmen who were stellar. Jacqueline Obermayer worked with 10th grade research scholar Cyd Bloomfield using genetic barcoding techniques to determine the species richness of Buttermilk Channel. Jonah Florholmen Boum was an integral part of Team Phys-Chem and is a candidate for our Data Analyst position next school year. Maddie Dominguez has also been an integral part of Team Phys-Chem.

2017 NYHS Harbor SEALs Citizen Science Team

Last week, May 17, we celebrated our 6th Annual Marine Science Symposium at the New York Harbor School. We had over 45 projects on display and over 30 volunteers from various industry and post-secondary institutions help judge. The highlight this year was the large number of volunteers who were former NYHS-MBRP alumni. Click here to view the Symposium Booklet with the complete list of volunteers, senior autobiographies, project titles, and Symposium results. Go New York Harbor School Marine Science!

Our 2017 Marine Biology Research Community.

2017 Senior MBRP Scholars!

Senior scholars of the 2016-7 MBRP.

To allow my students to struggle and flourish is one of the main goals I strive for as a marine research teacher. This year’s MBRP senior scholars completely embody this  way. I have witnessed a remarkable group of youngsters, now young adults, start off as rebellious schooled children and end off self-reliant and self-directed young adults ready for their open-ended futures. There is nothing more satisfying than this as an educator. These remarkable group of folks have managed to complete a comprehensive baseline study of the marine natural resources of the Harlem/East River and will be the first group in our program to be ready to take the Geographic Information Systems SPACE certification assessment.

Melanie Smith (Project Manager), Cindy Isidoro & Grace Carter (Co-Operations Analysts) of the CIVITAS, NYHF, NY Harbor SEALs collaborative study of the Harlem/East River.

Seeing these students work together to learn technical skills, content knowledge, project management skills, and leadership skills to complete their long term research has been remarkable to say the least. Some of the technical skills they developed along the way were methods to study benthos, plankton, physical-chemistry, and biodiversity using genetic barcoding. Melanie Smith, Cindy Isidoro, and Grace Carter managed over twenty-five (25) volunteers at any given point throughout their two year study. They weren’t timid to pull up sediment from the bottom of the Harlem River to look for signs of life. Their love for living things drove them to respectfully sieve through bucket fulls of mud brought up with their Ekman grab. You can find most of their data here. Stay tuned for a complete report to be published by the end of the month.

Melanie Smith (Project Manager), Jared Rosin (Marine Field Tech.), Erik Wiemer (Data Analayst), and Katha Conklin (Phytoplankton Specialist) presenting at the Career and Technical Education 2017 Open House at the DOE’s Central Headquarters, old TWEED Courthouse.

To manage, process, and represent the extensive data sets generated by our four teams we needed an impeccable analytical mind found in the person of Erik Wiemer, Project Data Analyst. Erik single-handily created a data management system and work flow that is now the backbone of the Harbor SEALs environmental monitoring system. All this work couldn’t be accomplished without the dedication of our team captains and field technicians. Katha Conklin (Phytoplankton Team Captain) and Jared Rosin (Field Technician) led their smaller groups on various field excursions that started often at seven in the morning and sometimes ending at dusk, rain or shine. These tenacious young scientists were the bedrock from which reliable data could be guaranteed.

Kaila Scott & Bella Valentin (GIS Analysts)

Gearing up for Geographic Information Systems certification are Kaila Scott, Bella Valentin, and Mariah Gathers. These students will be the first to attempt this feat in June. Their dedication and commitment has been inspiring. They have me on the trot keeping up with their progress as they blaze through the curriculum. These scholars are pioneering the last major component of the Marine Biology Research Program which is to ultimately map the data our teams are gathering.

Map generated by Kaila Scott (GIS Analyst).

Yesterday our MBRP seniors learned of the results of their New York City Science and Engineering Fair competition. Seeing our scholars on stage with the City’s most promising young scientists was an appropriate milestone highlighting the fruits of the struggle we began with in this story. The culture of science excellence in our Program and the school at large is finally beginning to blossom and flourish. 2017 MBRP Scholars, you’ll be missed. A heartfelt thank you to all family, friends, post-secondary and industry partners for your continued support. Look out INTEL here we come!

MBRP scholars competing at the 2017 NYCSEF competition and younger scholars showing up to support!

MARINE BIOLOGY RESEARCH 2016-7 FALL SEMESTER IN REVIEW

MBRP director Mauricio González inspects the experimental unit placed on the Harlem River seawall by his marine scholars. This experiment is testing the effects of live oysters, rip rap, Econcrete discs, and mycelium fungus buoys on marine invertebrate recruitment (Photo credit: Maura Smotrich).

The 2016-2017 school year marks the fourth year since our Marine Biology Research Program received NYSED CTE certification. Since that time, our scholars’ accomplishments have been numerous.  Among them, we’ve had thirty two (32) scholars receive State certification in Marine Resources Management (see our annual report for more information). We’ve had students attend various universities around the country including Columbia University, Fordham University, SUNY Oswego, and Brown University to name just a few. They’ve gone on to study various career majors such as Biology, Business Administration, Environmental Science, among others. They have earned over one hundred fifty-four (154) college credits and accessed over one hundred (100) paid internship opportunities. Mauricio González, program director, reflects: “It’s a wonderful feeling to look back and see what one instructor and forty scholars can accomplish yearly through dedication, passion, and the invaluable support of industry and post-secondary partners.”

10th Grade Marine Research scholar, Cyd Bloomfield, is amused as she reveals an oyster she caught off the Eco-dock on Governors Island with her benthic grab. These grabs are designed to pick up muck from the bottom of the river bed.

Our 2016 Professional Advisory Committee meeting was a success! We had over fifteen (15) members in attendance to review, as a Scientific Review Committee, research plans & final reports, help update curriculum, and provide us with the support needed to continue strong in the years to come. One of our industry partners, ConEdison provided us with a grant to update our after school Citizen Science group, the Harbor SEALs, with a much needed plotter to print large format maps and project boards. Our partners in the DOE’s Office of Post Secondary Readiness also provided us with a grant to update our Geographic Information Systems (GIS) and 3D prototyping curriculum. Among the resources we secured were a 3D printing curriculum, 3D printers, and the GIS extensions needed to certify our young scholars in map making. Our young scholars have been hard at work building the printer kits and learning how to design innovative 3D materials to promote the recruitment of marine benthic organisms and thereby increase the biodiversity of the Hudson-Raritan Estuary (HRE).

11th grade Marine Research scholar, Zoe Grier, builds her 3D printer kit from scratch.

Although there’s not a whole lot of biodiversity in the HRE, our scholars get to study the importance of biodiversity and calculate biodiversity indexes through our very own coral reef “simulator” consisting of a 36×48 trifold board and a collage of coral organisms pasted on it. Using a miniature quadrat grid, they calculate percent cover of sessile organisms and use their data to calculate Hill numbers. This training is essential to quantify the biodiversity of the HRE. It is only through these sorts of techniques that we can gain an objective understanding of whether the Estuary is indeed changing. It is our hope that we can start planning yearly visits to real coral and oyster reefs in the years to come.

The MBRP’s coral reef model.

Meanwhile, our 3 college credit SUNY Stony Brook Advanced Marine Biology class has been learning basic oceanography theory. Covering the gamut of topics including the philosophical idea of “progress” through chemical and physical oceanography, they have been preparing for the rigors of college and more specifically, science majors. Many young folks have an overly romantic view of marine biology. Too many are attracted to the fuzzy marine mammals or the cool top predators. In the MBRP, they come to realize that the world of marine biology is  a lot more extensive, messy, and tedious. Before our students begin their long term research projects they must read at least five peer reviewed journal articles, type up a research plan, and have their plan approved by a Scientific Review Committee. Most of what we do can be characterized as learning by “thinking before doing.” This education strategy teaches students how to plan, collect necessary resources, and build the necessary confidence in their ability to think. Once they go through this process they are stronger readers, writers, and mathematicians. This is the trick that makes our program valuable and year after year our alumni come back telling us of how confident they are in their college classes.

Our 11th and 12th grade Advanced Marine Biology scholars characterizing a sample of river muck through a sieve shaker.

This marine biology story wouldn’t be complete without mention of some of the plumbing that goes on behind the scenes to keep our recirculating aquaculture systems functional and our tilapia happy. PVC unions tend to go bust with the large fluctuations of temperature in our greenroom. One crack in the wrong place and our fish can be cut off from the life-sustaining systems. Maintaining these systems is another large component of our 11th grade curriculum. Our scholars learn the basics for keeping RAS systems healthy and in good working order.

Before and after shot of the PVC plumbing repair this last winter break.

All this hard work makes us really hungry. So this Valentines week, one of our special partners baked cupcakes for us which we dubbed “love cakes.” Thank you to all who provide the support and motivation needed to help keep this level of intense and ambitious work. Stay tuned for our next update where we’ll be highlighting one of our outstanding 12th grade research scholars. Go New York Harbor School Marine Science!

Our 11th grade Marine Research scholar, Matthew Chiu, holding up a “love cake.”

CTE + STEM = NY Harbor Restoration

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September 17. Melanie Smith, our Senior Project Manager (10 o’clock), Grace Carter & Cindy Isidoro, our Senior Operations Analysts, and the Harbor SEALs team organizing their first data collection day of the 2016-2017 season.

Welcome back to the 2016 – 2017 research season! Here, at the Career and Technical Education (CTE) Marine Biology Research (MBRP) & Harbor SEALs programs, our budding scientists have started the year picking up where they left off last – In full NY Harbor data collection, data analysis, and restoration mode. Our professional young SEALs scholars are finishing up their year long characterization of the Harlem River, a project designed to inform local government agencies of the environmental status of the Harlem River.

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The Benthos and Biodiversity Teams: (L to R) Isabella Torres (Biodiversity Captain), Marcus Charles (Benthos Captain), Grace Carter (Senior Co-Operations Analyst), and Cindy Isidoro (Senior Co-Operations Analyst). In this figure, they’ve pulled up an Eckman grab with a sample of good old NY muck to see if anything can indeed live in it and what these organisms may indicate of the health of the River.

This project is important because in order to propose viable solutions for the River’s environmental restoration we need to create a baseline of its ecological status. The civic, non-profit group CIVITAS, led by Ms. Maura Smotrich, has placed its trust in our scholars to deliver the information necessary to inform the East River Esplanade Ecological Edge project that will help restore the East and Harlem Rivers. This will in turn improve the lives of millions of New Yorkers. To view some of the preliminary raw data click on the following links: Physical Chemistry, Plankton, & Benthos. (This project is completely student led.)

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The Phys-Chem and Plankton Teams: In the background, Nicholas Ring (Junior Project Manager) heads up the testing of the physical and chemical parameters of the River. During this sampling run he observed that the dissolved oxygen was hovering around 5mg/L which is the first dangerous tolerance marker for most marine organisms. Right below this level, organisms stop reproducing. These levels are characteristic of most of the Harbor where sea walls are located  due to their anti-life characteristics, close to the muck that receives all the CSO effluents, and in September when the water temperature is typically at its apex.

This year, the Marine Biology Research Program is offering its students up to 18 college credits upon successful completion of the Program’s curriculum and assessments. In today’s economy, students need to be college AND career ready. The MBRP offers a 12 college credit program in Science Research through SUNY Albany, 3 college credits for passing the NOCTI Natural Resources Systems exam, and, new this year, 3 college credits for Oceanography through SUNY Stony Brook. Apart from these wonderful opportunities, our high school students will also have the chance, for the first time in NY State, to complete and become certified in Geographic Information Systems through Digital Quest’s SPACE certification. Last season, our CTE internship SEA WORKS program paid out over 50,000 dollars in salary for students’ work throughout their different CTE programs of which CIVITAS was a major internship provider for our MBRP scholars.

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Polychaeta worms are often found in the muck where dissolved oxygen levels are low.

Lastly, our Professional Advisory Committee member Mr. Michael Kessler from ConEdison has been supporting the MBRP and other CTE programs by helping to create a pipeline into technical jobs right out of our High School, the New York Harbor School, to give our young scholars options to enter the world of work with high paying, stable jobs of the future. A big thanks to all our Professional Advisory Committee members for stepping up to the plate and leading our school community members and the MBRP into a year brimming with exciting opportunities.

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Mudsnails are also frequent inhabitants of the River’s benthos.

MBRP SCHOLAR HIGHLIGHT: CEZANNE BIES

Cézanne Bies, class of 16, building experiemntal oyster cages for the COIVOTAS Esplanande project.
Cézanne Bies, class of ’16, building experimental oyster cages for the CIVITAS-Harbor SEALs Citizen Science project.

It’s not often that a young scholar passes through the public school system in New York with all the qualities of a true scientist: organized yet willing to take risks, diligent yet creative, attentive to detail yet an eye on the big picture, and, most importantly, not deterred by set-backs. Remarkable is the word that comes to mind when reviewing all of Cézanne Bies’, class of ’16, accomplishments and attributes in the past three years at the Marine Biology Research Program (MBRP). Cézanne was a finalist in the 2016 NYC Science and Engineering Fair together with her project partner Zain Bin Khalid for their project Survival and Growth Performance of Crassostrea virginica in the NYC Harbor, the  first scholar to earn 12 SUNY college credits for science research at the New York Harbor School (NYHS), and helped to launch the marine genetics program there too, just to name a few.

Cézanne Bies teacing her phys-chem team how to perform the Winkler Method to measure the dissolved oxygen of the Harlem River.
Cézanne Bies teaching her phys-chem team how to perform the Winkler Method to measure the dissolved oxygen of the Harlem River.

Whether collecting physical-chemistry samples from  the Hudson River Estuary, planting eel grass at Bush Terminal Piers park, organizing and analyzing Harbor SEALs project data, or extracting oyster DNA, Cézanne is always at the center of the action. Cézanne’s dedication and leadership has truly elevated the level of science at the NYHS and particularly the MBRP.

Cézanne Bies extracting eastern oyster DNA to test for genetic differences between farmed and wild oysters.
Cézanne Bies extracting eastern oyster DNA to test for genetic differences between farmed and wild oysters.

Early on in the 10th grade, Cézanne showed great promise as a budding scientist by constructing the 1st place winning wind racer with project partner Raphael Bonnano and in the 11th grade Cézanne won 1st place with the project Determining the Genetic Difference between Farmed and Wild Oysters. Cézanne’s unique curiosity and problem solving skills have been essential to running the Marine Science lab.

Cézanne Bies planting eel grass at Bush Terminal Piers Park, Brooklyn.
Cézanne Bies  and Orlando Ramos planting eel grass at Bush Terminal Piers Park, Brooklyn.

Aside from these accomplishments, Cézanne is a frequent contributor to the school newspaper, The Harbor Current, an intern with Earth Matter organizing the NYHS biomass production to create compost, an integral member of the Gay-Straight Alliance, and an editor of the NYHS year book. Cezanne intends to pursue a degree in marine restoration genetics. We wish Cézanne all the best in the years to come.

Cézanne Bies and Zain Khalid in the 2016 NYCSEF competition. They were recogized by NOASS and RICOH copany for the best project in ocean sustainable and restoration science.
Cézanne Bies and Zain Khalid in the 2016 NYCSEF competition. They were recognized by NOAA and the RICOH Company for the best project in ocean sustainability and restoration science.

SEALS & CIVITAS: Citizen Science Monitoring of the East River Esplanade

Pierre, senior genetic scientist mentor, and Nailea, beginner geneticist of the SEALS biodiversity team documenting a sample during our first East River Esplanade expedition of the NY Harbor SEALS/CIVITAS collaboratioon.
Pierre Landet, senior genetic scientist mentor, and Nailea Rodriguez, beginner geneticist of the SEALS biodiversity team documenting a sample during our first East River Esplanade expedition of the NY Harbor SEALS/CIVITAS collaboration.

Yesterday the NY Harbor SEALS team, a citizen science after school program at the New York Harbor School and the consulting branch of the Marine Biology Research Program, embarked on it’s first of at least fourteen expeditions up the East River to characterize the marine habitat between 96 and 116 streets. The purpose of these expeditions is to determine the biodiversity and water quality at this site in order to propose a restoration strategy to local government agencies. Composed of four teams, the SEALS analyze sediment, plankton-plastics, physical-chemistry, and genetic biodiversity samples using professional instrumentation and techniques. We would like to thank our post-secondary and project partners Dr. Alberto Stolfi of NYU, Dr. Kathleen Nolan of St. Francis College, Dr. Michael Judge of Manhattan College, Maura Smotrich of CIVITAS, the Hudson River Foundation, the Department of Environmental Conservation, the Environmental Defense Fund, the New York Harbor Foundation, and the New York Harbor School for their ongoing commitment to our budding Marine Biology Research scholars. Go New York Harbor School marine science!

NY Harbor SEALS citizen science team.
NY Harbor SEALS citizen science team.

NY Harbor SEALs Quality Assurance Project Plan. 

Download (PDF, 5.37MB)

SEALS/CIVITAS training session
SEALS/CIVITAS training session

Harbor Seals Retake New York Harbor

Harbor seal on a Governors Island dock in February 2015. Credit Ketelyn Fong, Class of 2015, NYHS.
Harbor seal on a Governors Island dock in February, 2015. Credit: Ketelyn Fong, Class of 2015, NYHS.

On one cold afternoon in February during the harsh winter of 2014 a harbor seal climbed on to a dock at Governors Island, NYC. This top consumer of the food chain has now been spotted in several sites along Manhattan Island recently. These are critical events that indirectly or directly, depending on your point of view, reveal that our waters have steadily improved since the passing of the Clean Water Act in 1972. It’s also fitting that the seal revealed itself to us on the last year of our Harbor SEALs / EPA Citizen Science Water Quality Monitoring of the Lower Hudson River Estuary. As we close this important chapter of our work, harbor seal on dock, we’re preparing for our next big project. We’ll now be focusing on creating a baseline study and monitor the effects of different construction materials on the East River. This new project, in partnership with the East Side non-profit community group, CIVITAS, is being run to inform the reconstruction of the East River Esplanade and continue our efforts to restore the harbor seal’s habitat around NYC. Please find an opportunity to read our Final EPA Citizen Science Water Quality Report and visit our webpage. Here’s to the return of the harbor seal!

Harbor SEALs Citizen Science Team's last sampling day of the Water Quality of the Lower Hudson River Estuary.
Harbor SEALs Citizen Science Team’s last sampling day of the Water Quality of the Lower Hudson River Estuary.

2014 New York Harbor School Science Symposium

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You’re cordially invited to attend our 3rd annual Science Symposium at the New York Harbor School on May 15 starting at 1pm. Experience cutting edge science from our very own Marine Research Scholars and our special guest, Dr. Peter Morawski, from the National Institute of Health. Dr. Morawski will be sharing his journey to a science career and talk about his latest research in molecular immunology. Stay tuned for more information. Go New York Harbor School science!

Marine Biology Research 2013 Fall Semester in Review

...after a long day's fieldwork...
…after a long day’s fieldwork…

The 2013 Fall semester at the Marine Biology Research and Harbor SEALs Programs has been full of progress. Starting with the generous support of our scholars, we were able to move our lab to the Marine Science room in 3 days. On October 12 we set off to restore eel grass at Brooklyn Pier’s Park with our team leader, Nicolle. Continue reading Marine Biology Research 2013 Fall Semester in Review

Day 02 – Harbor SEALs HRE Monitoring

Tahirah and Orlando pull up their group's water sample from the East River
Tahirah and Orlando pull up their group’s water sample from the East River

The Harbor SEALs completed their 2nd day of monitoring of the Upper Hudson River Estuary. Team work was in full display as the SEALs worked in subfreezing temperature. The data is available for the public here. Once the samples are taken, students quickly measure the dissolved oxygen using the Azide modification of the Winkler method, measure temperature, and enterococcus bacteria. It is quite a scene to watch the level of intensity the students obtain on a given sampling day. For more images of the SEALs at work click here.

On another note, congratulations to the winners of the invertebrate larvae identification contest. 10th graders Tahirah and Nicolle successfully identified the nauplius larvae as pertaining to a barnacle.

Harbor SEALs before their lab work..
The Harbor SEALs.